Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01262.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3690
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:275 original size:43 final size:42

Alignment explanation


    Indices: 215--297  Score: 157
    Period size: 43  Copynumber: 2.0  Consensus size: 42

        205 AAAGAATTTA

                                                      
        215 ACTTTTCTCTATCCTATCTATTATAGTGAATTTATTGCCCTG
          1 ACTTTTCTCTATCCTATCTATTATAGTGAATTTATTGCCCTG

                                                     
        257 ACTTTTCTCCTATCCTATCTATTATAGTGAATTTATTGCCC
          1 ACTTTTCT-CTATCCTATCTATTATAGTGAATTTATTGCCC

        298 GGTTCTCAGT


Statistics
Matches: 40,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  42    8  0.20
  43   32  0.80

ACGTcount: A:0.22, C:0.23, G:0.08, T:0.47


Consensus pattern (42 bp):   
ACTTTTCTCTATCCTATCTATTATAGTGAATTTATTGCCCTG
Done.