Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01269.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2430
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29


Found at i:189 original size:29 final size:29

Alignment explanation


    Indices: 119--176  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        109 TTTGCATCAA

                                         
        119 ATTTTGGAACTTGGGGGAGGGGGTTTCTT
          1 ATTTTGGAACTTGGGGGAGGGGGTTTCTT

                                         
        148 ATTTTGGAACTTGGGGGAGGGGGTTTCTT
          1 ATTTTGGAACTTGGGGGAGGGGGTTTCTT

        177 TCTTATGAAC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.14, C:0.07, G:0.41, T:0.38


Consensus pattern (29 bp):   
ATTTTGGAACTTGGGGGAGGGGGTTTCTT
Done.