Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01276.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3195
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:753 original size:25 final size:25

Alignment explanation


    Indices: 719--770  Score: 104
    Period size: 25  Copynumber: 2.1  Consensus size: 25

        709 ATACACAAAA

                                     
        719 GAAAATTTTGAACTAGCGTTTCTGG
          1 GAAAATTTTGAACTAGCGTTTCTGG

                                     
        744 GAAAATTTTGAACTAGCGTTTCTGG
          1 GAAAATTTTGAACTAGCGTTTCTGG

              
        769 GA
          1 GA

        771 TTTTCCATTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   27  1.00

ACGTcount: A:0.29, C:0.12, G:0.25, T:0.35


Consensus pattern (25 bp):   
GAAAATTTTGAACTAGCGTTTCTGG

Found at i:1861 original size:13 final size:14

Alignment explanation


    Indices: 1838--1871  Score: 54
    Period size: 13  Copynumber: 2.6  Consensus size: 14

       1828 TAAATTGCTG

                          
       1838 AAATCTGGTAATAT
          1 AAATCTGGTAATAT

                          
       1852 AAAT-TGGTAATAT
          1 AAATCTGGTAATAT

                    
       1865 AAA-CTGG
          1 AAATCTGG

       1872 CTCTATAATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  13   15  0.79
  14    4  0.21

ACGTcount: A:0.44, C:0.06, G:0.18, T:0.32


Consensus pattern (14 bp):   
AAATCTGGTAATAT
Done.