Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01277.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1353
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29


Found at i:299 original size:25 final size:25

Alignment explanation


    Indices: 270--321  Score: 104
    Period size: 25  Copynumber: 2.1  Consensus size: 25

        260 AAATGGAAAA

                                     
        270 TCCCAGAAACGCTAGTTCAAAATTT
          1 TCCCAGAAACGCTAGTTCAAAATTT

                                     
        295 TCCCAGAAACGCTAGTTCAAAATTT
          1 TCCCAGAAACGCTAGTTCAAAATTT

              
        320 TC
          1 TC

        322 TTTTGTGTAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   27  1.00

ACGTcount: A:0.35, C:0.25, G:0.12, T:0.29


Consensus pattern (25 bp):   
TCCCAGAAACGCTAGTTCAAAATTT
Done.