Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01279.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 882

Length: 1470
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:189 original size:18 final size:18

Alignment explanation


    Indices: 166--200  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        156 TTTGGTGTGA

                   *          
        166 TTTCCTGGTAATTCTTTC
          1 TTTCCTGATAATTCTTTC

                     *       
        184 TTTCCTGATGATTCTTT
          1 TTTCCTGATAATTCTTT

        201 TCTCTTTCCA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.11, C:0.20, G:0.11, T:0.57


Consensus pattern (18 bp):   
TTTCCTGATAATTCTTTC
Done.