Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01287.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3861
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:1924 original size:59 final size:59

Alignment explanation


    Indices: 1858--1975  Score: 236
    Period size: 59  Copynumber: 2.0  Consensus size: 59

       1848 TGAAAACATT

                                                                       
       1858 GCCTCTACTCCCAATGGTCACTATATAAGAGACTATAGAAATACATCTCAAAACTAGTG
          1 GCCTCTACTCCCAATGGTCACTATATAAGAGACTATAGAAATACATCTCAAAACTAGTG

                                                                       
       1917 GCCTCTACTCCCAATGGTCACTATATAAGAGACTATAGAAATACATCTCAAAACTAGTG
          1 GCCTCTACTCCCAATGGTCACTATATAAGAGACTATAGAAATACATCTCAAAACTAGTG

       1976 ACACCCTGAT


Statistics
Matches: 59,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  59   59  1.00

ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25


Consensus pattern (59 bp):   
GCCTCTACTCCCAATGGTCACTATATAAGAGACTATAGAAATACATCTCAAAACTAGTG
Done.