Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01293.F11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3447
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32


Found at i:417 original size:21 final size:21

Alignment explanation


    Indices: 393--434  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        383 TATGCGAATC

                         *        
        393 TTTTCTT-TTTTGGTGTTTGTT
          1 TTTTCTTGTTTTGAT-TTTGTT

                                 
        414 TTTTCTTGTTTTGATTTTGTT
          1 TTTTCTTGTTTTGATTTTGTT

        435 GGTGAGTGTG


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  21   13  0.68
  22    6  0.32

ACGTcount: A:0.02, C:0.05, G:0.17, T:0.76


Consensus pattern (21 bp):   
TTTTCTTGTTTTGATTTTGTT
Done.