Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01298.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 794

Length: 1324
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25


Found at i:1122 original size:39 final size:39

Alignment explanation


    Indices: 1068--1144  Score: 145
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       1058 ACTACAAAGG

                                   *               
       1068 GAGGATAATATATATATGTATGTTTGTATACACACACAT
          1 GAGGATAATATATATATGTATGTATGTATACACACACAT

                                                  
       1107 GAGGATAATATATATATGTATGTATGTATACACACACA
          1 GAGGATAATATATATATGTATGTATGTATACACACACA

       1145 CACATATATT


Statistics
Matches: 37,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  39   37  1.00

ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34


Consensus pattern (39 bp):   
GAGGATAATATATATATGTATGTATGTATACACACACAT
Done.