Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01301.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 406

Length: 678
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:72 original size:13 final size:13

Alignment explanation


    Indices: 54--78  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

         44 AGCTATAATT

                         
         54 AAATTAAAAATAC
          1 AAATTAAAAATAC

                        
         67 AAATTAAAAATA
          1 AAATTAAAAATA

         79 TAATTTTATG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24


Consensus pattern (13 bp):   
AAATTAAAAATAC
Done.