Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01317.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3592
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32


Found at i:2997 original size:70 final size:70

Alignment explanation


    Indices: 2884--3026  Score: 268
    Period size: 70  Copynumber: 2.0  Consensus size: 70

       2874 GAGCTATGAT

                                                                             
       2884 GAGTTTGATTTGAATACTGTCTTTTATACAATGTTTAAACTATCCAAATCTCTCCCCAATCCCTA
          1 GAGTTTGATTTGAATACTGTCTTTTATACAATGTTTAAACTATCCAAATCTCTCCCCAATCCCTA

                 
       2949 AAGTG
         66 AAGTG

                                                                  *   *      
       2954 GAGTTTGATTTGAATACTGTCTTTTATACAATGTTTAAACTATCCAAATCTCTCTCCACTCCCTA
          1 GAGTTTGATTTGAATACTGTCTTTTATACAATGTTTAAACTATCCAAATCTCTCCCCAATCCCTA

                 
       3019 AAGTG
         66 AAGTG

               
       3024 GAG
          1 GAG

       3027 GATATTACGC


Statistics
Matches: 71,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  70   71  1.00

ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37


Consensus pattern (70 bp):   
GAGTTTGATTTGAATACTGTCTTTTATACAATGTTTAAACTATCCAAATCTCTCCCCAATCCCTA
AAGTG
Done.