Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01318.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5783
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31


Found at i:3078 original size:70 final size:70

Alignment explanation


    Indices: 2965--3107  Score: 268
    Period size: 70  Copynumber: 2.0  Consensus size: 70

       2955 GAGCTATGAT

                                                                             
       2965 GAGTTTGATTTGAATACTGTCTTTTATACAATGTTTAAACTATCCAAATCTCTCCCCAATCCCTA
          1 GAGTTTGATTTGAATACTGTCTTTTATACAATGTTTAAACTATCCAAATCTCTCCCCAATCCCTA

                 
       3030 AAGTG
         66 AAGTG

                                                                  *   *      
       3035 GAGTTTGATTTGAATACTGTCTTTTATACAATGTTTAAACTATCCAAATCTCTCTCCACTCCCTA
          1 GAGTTTGATTTGAATACTGTCTTTTATACAATGTTTAAACTATCCAAATCTCTCCCCAATCCCTA

                 
       3100 AAGTG
         66 AAGTG

               
       3105 GAG
          1 GAG

       3108 GATATTACGC


Statistics
Matches: 71,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  70   71  1.00

ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37


Consensus pattern (70 bp):   
GAGTTTGATTTGAATACTGTCTTTTATACAATGTTTAAACTATCCAAATCTCTCCCCAATCCCTA
AAGTG
Done.