Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01340.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3210
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27


Found at i:836 original size:12 final size:12

Alignment explanation


    Indices: 819--850  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

        809 GGAGAAGTTT

                        
        819 GAAGATGAGGAC
          1 GAAGATGAGGAC

                       *
        831 GAAGATGAGGAT
          1 GAAGATGAGGAC

                    
        843 GAAGATGA
          1 GAAGATGA

        851 ATCTGGCTCT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.44, C:0.03, G:0.41, T:0.12


Consensus pattern (12 bp):   
GAAGATGAGGAC
Done.