Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01341.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3002
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27


Found at i:634 original size:12 final size:12

Alignment explanation


    Indices: 617--649  Score: 66
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        607 AGGAGAAGTT

                        
        617 TGAAGATGAGGA
          1 TGAAGATGAGGA

                        
        629 TGAAGATGAGGA
          1 TGAAGATGAGGA

                     
        641 TGAAGATGA
          1 TGAAGATGA

        650 ATCTGGCTCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.42, C:0.00, G:0.39, T:0.18


Consensus pattern (12 bp):   
TGAAGATGAGGA

Found at i:636 original size:6 final size:6

Alignment explanation


    Indices: 617--650  Score: 50
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        607 AGGAGAAGTT

                      *             *              
        617 TGAAGA TGAGGA TGAAGA TGAGGA TGAAGA TGAA
          1 TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA TGAA

        651 TCTGGCTCTG


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.44, C:0.00, G:0.38, T:0.18


Consensus pattern (6 bp):   
TGAAGA
Done.