Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02231.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2676
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31


Found at i:2086 original size:16 final size:16

Alignment explanation


    Indices: 2065--2096  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       2055 CATCTAAAAG

                            
       2065 GAAACCATGATTTTTC
          1 GAAACCATGATTTTTC

                            
       2081 GAAACCATGATTTTTC
          1 GAAACCATGATTTTTC

       2097 AGGGATTTGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38


Consensus pattern (16 bp):   
GAAACCATGATTTTTC
Done.