Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01359.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4336
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:3431 original size:21 final size:21

Alignment explanation


    Indices: 3407--3447  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3397 TGGTATTTTT

                 *   *           
       3407 CCTAAGGAGGATGAAATTGTG
          1 CCTAACGAGAATGAAATTGTG

                                
       3428 CCTAACGAGAATGAAATTGT
          1 CCTAACGAGAATGAAATTGT

       3448 AGACATACAA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24


Consensus pattern (21 bp):   
CCTAACGAGAATGAAATTGTG
Done.