Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01364.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3766
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Found at i:2565 original size:7 final size:7

Alignment explanation


    Indices: 2553--2579  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

       2543 ACAAACAGCC

                   
       2553 TTTTCAG
          1 TTTTCAG

                   
       2560 TTTTCAG
          1 TTTTCAG

                   
       2567 TTTTCAG
          1 TTTTCAG

                  
       2574 TTTTCA
          1 TTTTCA

       2580 CTTTCCTGCC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.15, C:0.15, G:0.11, T:0.59


Consensus pattern (7 bp):   
TTTTCAG

Done.