Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01401.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12595
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28


Found at i:5227 original size:126 final size:127

Alignment explanation


    Indices: 4999--5252  Score: 402
    Period size: 126  Copynumber: 2.0  Consensus size: 127

       4989 AGAAAACCCG

                   *                                               *         
       4999 GTCATAATCATGCTGTCATTATTGATCAAAAGGCCCTGCCCCTACCCCAGCCAATTGAACAATCA
          1 GTCATAACCATGCTGTCATTATTGATC--AAGGCCCTGCCCCTACCCCAGCCAATGGAACAATCA

                                                        *   *               
       5064 GATAGGAACTGTCAGCCTGAAGCAAACCAGCAATTACAAGCAAAGTCCTGGGTCAATAACTGTA
         64 GATAGGAACTGTCAGCCTGAAGCAAACCAGCAATTACAAGCAAAATCCAGGGTCAATAACTGTA

                                                   *   *                     
       5128 GTCATAACCATGCTGTCATTATTGATC-AGGCCCTGCCCTTACTCCAGCCAATGGAACAATCAGA
          1 GTCATAACCATGCTGTCATTATTGATCAAGGCCCTGCCCCTACCCCAGCCAATGGAACAATCAGA

                *        *            *                                  
       5192 TAGGTACTGTCAGTCTGAAGCAAACCGGCAATTACAAGCAAAATCCAGGGTCAATAACTGT
         66 TAGGAACTGTCAGCCTGAAGCAAACCAGCAATTACAAGCAAAATCCAGGGTCAATAACTGT

       5253 GACCCTATAA


Statistics
Matches: 116,  Mismatches: 9, Indels: 3
        0.91            0.07        0.02

Matches are distributed among these distances:
 126   90  0.78
 129   26  0.22

ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22


Consensus pattern (127 bp):   
GTCATAACCATGCTGTCATTATTGATCAAGGCCCTGCCCCTACCCCAGCCAATGGAACAATCAGA
TAGGAACTGTCAGCCTGAAGCAAACCAGCAATTACAAGCAAAATCCAGGGTCAATAACTGTA
Done.