Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01408.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 925

Length: 1543
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31


Found at i:117 original size:5 final size:6

Alignment explanation


    Indices: 100--124  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

         90 GGAGGGTTTC

                                         
        100 TCTTTT TCTTTT TCTTTT TCTTTT T
          1 TCTTTT TCTTTT TCTTTT TCTTTT T

        125 AAAATCTGTG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84


Consensus pattern (6 bp):   
TCTTTT

Done.