Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01420.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 480

Length: 801
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36


Found at i:536 original size:22 final size:21

Alignment explanation


    Indices: 502--553  Score: 61
    Period size: 22  Copynumber: 2.4  Consensus size: 21

        492 AAGGCAACGT

                                  
        502 GGAGGCGCGAGGGTGG-CATAC
          1 GGAGGCGCGAGGG-GGTCATAC

                   *          *   
        523 GGAGGCGTGCAGGGGGTCGTAC
          1 GGAGGCGCG-AGGGGGTCATAC

                     
        545 GGAGGCGCG
          1 GGAGGCGCG

        554 CTGGAGGCTA


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  21   10  0.38
  22   16  0.62

ACGTcount: A:0.15, C:0.19, G:0.56, T:0.10


Consensus pattern (21 bp):   
GGAGGCGCGAGGGGGTCATAC
Done.