Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01422.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1037
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29


Found at i:247 original size:5 final size:5

Alignment explanation


    Indices: 237--270  Score: 68
    Period size: 5  Copynumber: 6.8  Consensus size: 5

        227 GAAGTTCCGA

                                                    
        237 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTC
          1 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTC

        271 TTTCTCACTT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   29  1.00

ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41


Consensus pattern (5 bp):   
CTTCC

Done.