Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01423.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3239
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26


Found at i:1047 original size:21 final size:21

Alignment explanation


    Indices: 1023--1067  Score: 65
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1013 GAGGGATCAA

                       *          
       1023 ATGCTGGAGTCCCAGAAA-AAC
          1 ATGCTGGAGTCACA-AAACAAC

                                 
       1044 ATGCTGGAGTCACAAAACAAC
          1 ATGCTGGAGTCACAAAACAAC

               
       1065 ATG
          1 ATG

       1068 ATGAGCCAGC


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  20    3  0.14
  21   19  0.86

ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16


Consensus pattern (21 bp):   
ATGCTGGAGTCACAAAACAAC
Done.