Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01436.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 892

Length: 1487
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28


Found at i:1403 original size:15 final size:15

Alignment explanation


    Indices: 1383--1413  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1373 TATGTTGTGT

                           
       1383 TTGGTTTGGTTTTGG
          1 TTGGTTTGGTTTTGG

                    *      
       1398 TTGGTTTGTTTTTGG
          1 TTGGTTTGGTTTTGG

             
       1413 T
          1 T

       1414 CCTTTGAAAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.00, C:0.00, G:0.35, T:0.65


Consensus pattern (15 bp):   
TTGGTTTGGTTTTGG
Done.