Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01448.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2065
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35


Found at i:69 original size:25 final size:25

Alignment explanation


    Indices: 35--82  Score: 96
    Period size: 25  Copynumber: 1.9  Consensus size: 25

         25 TTAAACTTTT

                                     
         35 TTTTTCTTTCTTTTCAAAATTTTAC
          1 TTTTTCTTTCTTTTCAAAATTTTAC

                                   
         60 TTTTTCTTTCTTTTCAAAATTTT
          1 TTTTTCTTTCTTTTCAAAATTTT

         83 CTTCTCTTAC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.19, C:0.15, G:0.00, T:0.67


Consensus pattern (25 bp):   
TTTTTCTTTCTTTTCAAAATTTTAC

Found at i:1690 original size:18 final size:18

Alignment explanation


    Indices: 1667--1718  Score: 95
    Period size: 18  Copynumber: 2.9  Consensus size: 18

       1657 ATCACACAGT

                              
       1667 TACGAACTCATCCAAATC
          1 TACGAACTCATCCAAATC

                              
       1685 TACGAACTCATCCAAATC
          1 TACGAACTCATCCAAATC

             *              
       1703 TGCGAACTCATCCAAA
          1 TACGAACTCATCCAAA

       1719 GTTGTGAGCT


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  18   33  1.00

ACGTcount: A:0.38, C:0.33, G:0.08, T:0.21


Consensus pattern (18 bp):   
TACGAACTCATCCAAATC
Done.