Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01455.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2015
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31


Found at i:1134 original size:55 final size:55

Alignment explanation


    Indices: 1052--1163  Score: 188
    Period size: 55  Copynumber: 2.0  Consensus size: 55

       1042 TGATGACTGA

                                                   *               
       1052 TATTTATTCATTGTATAGCATTCCTTGATGAAAATACTGCAGAACCATGTATTTT
          1 TATTTATTCATTGTATAGCATTCCTTGATGAAAATACTGAAGAACCATGTATTTT

                                  *            *         *         
       1107 TATTTATTCATTGTATAGCATTTCTTGATGAAAATGCTGAAGAACTATGTATTTT
          1 TATTTATTCATTGTATAGCATTCCTTGATGAAAATACTGAAGAACCATGTATTTT

              
       1162 TA
          1 TA

       1164 CCTACAATCC


Statistics
Matches: 53,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  55   53  1.00

ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44


Consensus pattern (55 bp):   
TATTTATTCATTGTATAGCATTCCTTGATGAAAATACTGAAGAACCATGTATTTT
Done.