Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01460.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4078
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:2813 original size:51 final size:51

Alignment explanation


    Indices: 2753--2852  Score: 191
    Period size: 51  Copynumber: 2.0  Consensus size: 51

       2743 GCCTGTACGA

                                                               
       2753 TGGCTTGATTAAGAACATCCGTTAAACGTTTGATTCAATGGGTAAGTATAT
          1 TGGCTTGATTAAGAACATCCGTTAAACGTTTGATTCAATGGGTAAGTATAT

                                      *                      
       2804 TGGCTTGATTAAGAACATCCGTTAAATGTTTGATTCAATGGGTAAGTAT
          1 TGGCTTGATTAAGAACATCCGTTAAACGTTTGATTCAATGGGTAAGTAT

       2853 TTGAGTTGCC


Statistics
Matches: 48,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  51   48  1.00

ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36


Consensus pattern (51 bp):   
TGGCTTGATTAAGAACATCCGTTAAACGTTTGATTCAATGGGTAAGTATAT
Done.