Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01467.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2688
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:801 original size:61 final size:55

Alignment explanation


    Indices: 732--848  Score: 171
    Period size: 61  Copynumber: 2.0  Consensus size: 55

        722 CCGTAAGACA

                                                                         
        732 TTTTCCATCACCTTCTTCATCCAGGTAAGTCTTCTTCTTCTTCTTATTCCGTTCTTCAACT
          1 TTTTCCATCACCTTCTTCATCCAGGTAAGTC-T-TTCTTC-TC---TTCCGTTCTTCAACT

                     *                                             
        793 TTTTCCATCTCCTTCTTCATCCAGGTAAGTCTTTCTTCTCTTCCGTTCTTCAACT
          1 TTTTCCATCACCTTCTTCATCCAGGTAAGTCTTTCTTCTCTTCCGTTCTTCAACT

             
        848 T
          1 T

        849 CTTAAATATT


Statistics
Matches: 55,  Mismatches: 1, Indels: 6
        0.89            0.02        0.10

Matches are distributed among these distances:
  55   16  0.29
  58    2  0.04
  59    6  0.11
  60    1  0.02
  61   30  0.55

ACGTcount: A:0.14, C:0.32, G:0.07, T:0.48


Consensus pattern (55 bp):   
TTTTCCATCACCTTCTTCATCCAGGTAAGTCTTTCTTCTCTTCCGTTCTTCAACT
Done.