Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01482.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 940

Length: 1567
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38


Found at i:226 original size:25 final size:25

Alignment explanation


    Indices: 198--247  Score: 73
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        188 CAGGTAAGGC

                        *      *     
        198 TCCTTCTCCTTCTTCCGTTTTTCAT
          1 TCCTTCTCCTTCATCCGTTCTTCAT

                 *                   
        223 TCCTTTTCCTTCATCCGTTCTTCAT
          1 TCCTTCTCCTTCATCCGTTCTTCAT

        248 CTTCTCTTCC


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  25   22  1.00

ACGTcount: A:0.06, C:0.36, G:0.04, T:0.54


Consensus pattern (25 bp):   
TCCTTCTCCTTCATCCGTTCTTCAT
Done.