Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01490.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 711

Length: 1185
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:1141 original size:57 final size:57

Alignment explanation


    Indices: 1053--1165  Score: 226
    Period size: 57  Copynumber: 2.0  Consensus size: 57

       1043 CATGTTGTTG

                                                                     
       1053 CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATATT
          1 CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATATT

                                                                    
       1110 CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATAT
          1 CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATAT

       1166 GATAATTTCG


Statistics
Matches: 56,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  57   56  1.00

ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33


Consensus pattern (57 bp):   
CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATATT
Done.