Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01490.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 777

Length: 1296
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32


Found at i:1252 original size:57 final size:57

Alignment explanation


    Indices: 1164--1276  Score: 226
    Period size: 57  Copynumber: 2.0  Consensus size: 57

       1154 CATGTTGTTG

                                                                     
       1164 CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATATT
          1 CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATATT

                                                                    
       1221 CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATAT
          1 CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATAT

       1277 GATAATTTCG


Statistics
Matches: 56,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  57   56  1.00

ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33


Consensus pattern (57 bp):   
CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATATT
Done.