Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01491.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 679

Length: 1133
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28


Found at i:192 original size:3 final size:3

Alignment explanation


    Indices: 184--212  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

        174 CCGAGCTTGT

                                                  
        184 TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TG

        213 GAGAGTCAGG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34


Consensus pattern (3 bp):   
TGA

Done.