Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01503.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1836
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35


Found at i:1008 original size:19 final size:19

Alignment explanation


    Indices: 984--1021  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        974 AACCTGGGGT

                               
        984 AGGAAAAGAAAATATGATG
          1 AGGAAAAGAAAATATGATG

                               
       1003 AGGAAAAGAAAATATGATG
          1 AGGAAAAGAAAATATGATG

       1022 TAATTGGTAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.58, C:0.00, G:0.26, T:0.16


Consensus pattern (19 bp):   
AGGAAAAGAAAATATGATG
Done.