Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01532.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1806
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32


Found at i:275 original size:15 final size:15

Alignment explanation


    Indices: 255--288  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        245 CCCTTTCACA

                  *    *   
        255 TTCCTCTTCCTTTCT
          1 TTCCTCCTCCTCTCT

                           
        270 TTCCTCCTCCTCTCT
          1 TTCCTCCTCCTCTCT

                
        285 TTCC
          1 TTCC

        289 GTTCCTTGGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53


Consensus pattern (15 bp):   
TTCCTCCTCCTCTCT
Done.