Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01552.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3844
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33


Found at i:402 original size:51 final size:51

Alignment explanation


    Indices: 326--427  Score: 195
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        316 TTATTAGGTT

                                                     *         
        326 CATATGCACTCATTTTGGACTGTTTATGTCAGCTGTTATACCCGGAGAACA
          1 CATATGCACTCATTTTGGACTGTTTATGTCAGCTGTTATACACGGAGAACA

                                                               
        377 CATATGCACTCATTTTGGACTGTTTATGTCAGCTGTTATACACGGAGAACA
          1 CATATGCACTCATTTTGGACTGTTTATGTCAGCTGTTATACACGGAGAACA

        428 AGTAAATGGT


Statistics
Matches: 50,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  51   50  1.00

ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33


Consensus pattern (51 bp):   
CATATGCACTCATTTTGGACTGTTTATGTCAGCTGTTATACACGGAGAACA
Done.