Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01570.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 682

Length: 1138
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:838 original size:33 final size:33

Alignment explanation


    Indices: 801--869  Score: 95
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        791 GGAGTTCATA

                                              
        801 ATAAAAGAAG-GACCTTCAAGTCTGAGATTTATG
          1 ATAAAAGAAGTGA-CTTCAAGTCTGAGATTTATG

                         *            *   *  
        834 ATAAAAGAAGTGATTTCAAGTCTGAGGTTTTTG
          1 ATAAAAGAAGTGACTTCAAGTCTGAGATTTATG

               
        867 ATA
          1 ATA

        870 TGAGCTTACA


Statistics
Matches: 32,  Mismatches: 3, Indels: 2
        0.86            0.08        0.05

Matches are distributed among these distances:
  33   30  0.94
  34    2  0.06

ACGTcount: A:0.38, C:0.09, G:0.22, T:0.32


Consensus pattern (33 bp):   
ATAAAAGAAGTGACTTCAAGTCTGAGATTTATG
Done.