Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01607.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3135
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25


Found at i:480 original size:6 final size:6

Alignment explanation


    Indices: 466--584  Score: 130
    Period size: 6  Copynumber: 19.8  Consensus size: 6

        456 CCGGCTTCGA

                *            *      *                  *      *    
        466 CTCCGG CTCCTG CTCGTG CTCGTG CTCCTG CTCCTG CACCTG CACCTG
          1 CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG

                                             *    *        *      *
        514 CTCCTG CTCCTG CTCCTG CTCCTG CTCCTA CTCGTG CTCCTA CTCCTA
          1 CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG

                 *      *      *      
        562 CTCCTA CTCCTA CTCCTA CTCCT
          1 CTCCTG CTCCTG CTCCTG CTCCT

        585 ACTACCACTT


Statistics
Matches: 103,  Mismatches: 10, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6  103  1.00

ACGTcount: A:0.07, C:0.48, G:0.14, T:0.31


Consensus pattern (6 bp):   
CTCCTG

Done.