Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01622.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4801
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34


Found at i:94 original size:17 final size:18

Alignment explanation


    Indices: 69--102  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

         59 AAACATGCCA

                              
         69 AAAAAAAT-ATATTTTAT
          1 AAAAAAATAATATTTTAT

                *            
         86 AAAACAATAATATTTTA
          1 AAAAAAATAATATTTTA

        103 ATCTTTACTC


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    7  0.47
  18    8  0.53

ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38


Consensus pattern (18 bp):   
AAAAAAATAATATTTTAT
Done.