Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01626.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 733

Length: 1223
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34


Found at i:1155 original size:20 final size:20

Alignment explanation


    Indices: 1130--1169  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1120 GTTGTATGAT

                                
       1130 GCCCACTCACTTTTATTTAC
          1 GCCCACTCACTTTTATTTAC

                                
       1150 GCCCACTCACTTTTATTTAC
          1 GCCCACTCACTTTTATTTAC

       1170 TGTTTGATGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.20, C:0.35, G:0.05, T:0.40


Consensus pattern (20 bp):   
GCCCACTCACTTTTATTTAC
Done.