Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01635.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2249
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:169 original size:33 final size:33

Alignment explanation


    Indices: 127--194  Score: 136
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        117 CTCAATTCAT

                                             
        127 TGCTAGTTTCCATCAGACAATCCATCGAATCAA
          1 TGCTAGTTTCCATCAGACAATCCATCGAATCAA

                                             
        160 TGCTAGTTTCCATCAGACAATCCATCGAATCAA
          1 TGCTAGTTTCCATCAGACAATCCATCGAATCAA

              
        193 TG
          1 TG

        195 ACAAAATGAT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   35  1.00

ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28


Consensus pattern (33 bp):   
TGCTAGTTTCCATCAGACAATCCATCGAATCAA
Done.