Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01647.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 843

Length: 1405
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:707 original size:6 final size:6

Alignment explanation


    Indices: 692--743  Score: 86
    Period size: 6  Copynumber: 8.7  Consensus size: 6

        682 ATAATTTAAA

                *       *                                          
        692 ACATTT ACATAC ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
          1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT

                
        740 ACAT
          1 ACAT

        744 GCATATATGC


Statistics
Matches: 43,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   43  1.00

ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33


Consensus pattern (6 bp):   
ACATAT

Done.