Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01658.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2410
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28


Found at i:2325 original size:5 final size:5

Alignment explanation


    Indices: 2315--2341  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

       2305 GGGGGTAGTG

                                            
       2315 TGGGA TGGGA TGGGA TGGGA TGGGA TG
          1 TGGGA TGGGA TGGGA TGGGA TGGGA TG

       2342 AAACATATAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.19, C:0.00, G:0.59, T:0.22


Consensus pattern (5 bp):   
TGGGA

Done.