Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01667.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 877

Length: 1463
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27


Found at i:116 original size:36 final size:37

Alignment explanation


    Indices: 62--134  Score: 121
    Period size: 36  Copynumber: 2.0  Consensus size: 37

         52 CAGAAGGACA

                         *                       
         62 AAAGAAAAAAAAATGGAACAGGCAACCAATTCTATTG
          1 AAAGAAAAAAAAACGGAACAGGCAACCAATTCTATTG

                                    *            
         99 AAAG-AAAAAAAACGGAACAGGCAGCCAATTCTATTG
          1 AAAGAAAAAAAAACGGAACAGGCAACCAATTCTATTG

        135 TTTTTCTTGC


Statistics
Matches: 34,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
  36   30  0.88
  37    4  0.12

ACGTcount: A:0.52, C:0.15, G:0.18, T:0.15


Consensus pattern (37 bp):   
AAAGAAAAAAAAACGGAACAGGCAACCAATTCTATTG
Done.