Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01669.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 850

Length: 1417
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32


Found at i:403 original size:16 final size:16

Alignment explanation


    Indices: 382--412  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        372 TGCCCTCTTC

                            
        382 CGACTTTAACAAGATT
          1 CGACTTTAACAAGATT

                           
        398 CGACTTTAACAAGAT
          1 CGACTTTAACAAGAT

        413 CCATAGGATG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29


Consensus pattern (16 bp):   
CGACTTTAACAAGATT
Done.