Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01679.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12268
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:7128 original size:17 final size:15

Alignment explanation


    Indices: 7082--7134  Score: 56
    Period size: 14  Copynumber: 3.5  Consensus size: 15

       7072 TATTTTAAGT

                           
       7082 TTATTTTAA-TTTTA
          1 TTATTTTAATTTTTA

                       *   
       7096 TT-TTTTAATTATTA
          1 TTATTTTAATTTTTA

                             
       7110 TTATTTTAGATTTTATA
          1 TTATTTTA-ATTTT-TA

                    
       7127 TTAATTTT
          1 TT-ATTTT

       7135 CTTAAGCTAT


Statistics
Matches: 32,  Mismatches: 2, Indels: 6
        0.80            0.05        0.15

Matches are distributed among these distances:
  13    6  0.19
  14    8  0.25
  15    5  0.16
  16    4  0.12
  17    4  0.12
  18    5  0.16

ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70


Consensus pattern (15 bp):   
TTATTTTAATTTTTA
Done.