Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01690.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 416

Length: 694
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36


Found at i:170 original size:16 final size:15

Alignment explanation


    Indices: 136--175  Score: 64
    Period size: 16  Copynumber: 2.7  Consensus size: 15

        126 TTTTTCGTAT

                           
        136 AAAAATAAA-AATAA
          1 AAAAATAAATAATAA

                            
        150 AAAAATAAATAATACA
          1 AAAAATAAATAATA-A

                      
        166 AAAAATAAAT
          1 AAAAATAAAT

        176 GAAATCAGAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  14    9  0.38
  15    4  0.17
  16   11  0.46

ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17


Consensus pattern (15 bp):   
AAAAATAAATAATAA

Found at i:634 original size:18 final size:18

Alignment explanation


    Indices: 611--650  Score: 80
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        601 GTAAATGGAC

                              
        611 TATTGGACTTTTATTATT
          1 TATTGGACTTTTATTATT

                              
        629 TATTGGACTTTTATTATT
          1 TATTGGACTTTTATTATT

                
        647 TATT
          1 TATT

        651 ATTTTTTAGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.23, C:0.05, G:0.10, T:0.62


Consensus pattern (18 bp):   
TATTGGACTTTTATTATT
Done.