Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01693.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3412
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:3170 original size:8 final size:8

Alignment explanation


    Indices: 3157--3195  Score: 71
    Period size: 8  Copynumber: 5.0  Consensus size: 8

       3147 AATTTACCAG

                    
       3157 AGAAGAGA
          1 AGAAGAGA

                    
       3165 AGAAGAGA
          1 AGAAGAGA

                    
       3173 AGAAGAGA
          1 AGAAGAGA

                    
       3181 AGAAGAGA
          1 AGAAGAGA

                    
       3189 A-AAGAGA
          1 AGAAGAGA

       3196 TTTCGAGAGA


Statistics
Matches: 31,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   7    6  0.19
   8   25  0.81

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (8 bp):   
AGAAGAGA

Found at i:3221 original size:7 final size:7

Alignment explanation


    Indices: 3209--3238  Score: 51
    Period size: 7  Copynumber: 4.3  Consensus size: 7

       3199 CGAGAGAGAA

                   
       3209 AGAGATG
          1 AGAGATG

                   
       3216 AGAGATG
          1 AGAGATG

                 * 
       3223 AGAGACG
          1 AGAGATG

                   
       3230 AGAGATG
          1 AGAGATG

              
       3237 AG
          1 AG

       3239 CAAACCAATC


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.43, C:0.03, G:0.43, T:0.10


Consensus pattern (7 bp):   
AGAGATG

Done.