Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01695.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3654
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29


Found at i:3611 original size:58 final size:58

Alignment explanation


    Indices: 3542--3654  Score: 217
    Period size: 58  Copynumber: 1.9  Consensus size: 58

       3532 AAGCACCATT

                                                                      
       3542 CAGCTGCTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAGTAC
          1 CAGCTGCTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAGTAC

                  *                                                
       3600 CAGCTGTTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAG
          1 CAGCTGCTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAG


Statistics
Matches: 54,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  58   54  1.00

ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39


Consensus pattern (58 bp):   
CAGCTGCTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAGTAC
Done.