Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01695.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4227
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30


Found at i:4184 original size:58 final size:58

Alignment explanation


    Indices: 4115--4227  Score: 217
    Period size: 58  Copynumber: 1.9  Consensus size: 58

       4105 AAGCACCATT

                                                                      
       4115 CAGCTGCTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAGTAC
          1 CAGCTGCTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAGTAC

                  *                                                
       4173 CAGCTGTTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAG
          1 CAGCTGCTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAG


Statistics
Matches: 54,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  58   54  1.00

ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39


Consensus pattern (58 bp):   
CAGCTGCTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAGTAC
Done.