Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01713.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5545
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34


Found at i:1857 original size:46 final size:45

Alignment explanation


    Indices: 1806--1972  Score: 176
    Period size: 46  Copynumber: 3.7  Consensus size: 45

       1796 GACGAGGGCT

                                                          
       1806 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
          1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGAGCC

                                            *       **    
       1852 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTTAGCC
          1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGAGCC

            *    *          *        *  *  *          *  *
       1898 TGTGTCAGACATGTCTTGGACATGCGTCGGCTACA-A-GATGTGCT
          1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GAGCC

                            *        *     
       1942 AGTGTAAGACATGTCTAGGACATGCGTCAGC
          1 AGTGTAAGACATGTCTGGGACATGCATCAGC

       1973 ACGGTTACAT


Statistics
Matches: 101,  Mismatches: 18, Indels: 6
        0.81            0.14        0.05

Matches are distributed among these distances:
  43    1  0.01
  44   30  0.30
  45    1  0.01
  46   67  0.66
  47    2  0.02

ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24


Consensus pattern (45 bp):   
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAGCC
Done.