Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01736.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2045
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33


Found at i:1116 original size:22 final size:22

Alignment explanation


    Indices: 1088--1131  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1078 ACCTAAGGAA

                                  
       1088 GTCTCTTTAAAAGGTAACTCAT
          1 GTCTCTTTAAAAGGTAACTCAT

                                  
       1110 GTCTCTTTAAAAGGTAACTCAT
          1 GTCTCTTTAAAAGGTAACTCAT

       1132 TTACTCAATC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36


Consensus pattern (22 bp):   
GTCTCTTTAAAAGGTAACTCAT
Done.