Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01753.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 617

Length: 1029
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31


Found at i:54 original size:2 final size:2

Alignment explanation


    Indices: 47--91  Score: 90
    Period size: 2  Copynumber: 22.5  Consensus size: 2

         37 CCAGATTTGT

                                                                          
         47 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                
         89 TC T
          1 TC T

         92 TTCCAATCAA


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   43  1.00

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51


Consensus pattern (2 bp):   
TC

Done.